Publications
Mestre, A., Barfield, M., Peniston, J.H., Peres-Neto, P.R., Mesquita-Joanes, F. and Holt, R.D. 2021. Disturbance-induced emigration: an overlooked mechanism that reduces metapopulation extinction risk. Ecology (in press).
Founier, B., Vázquez-Rivera, H., Clappe, S., Donelle, L., Braga, P.H.P. and Peres-Neto, P.R. 2020. The spatial frequency of climatic conditions affects niche composition and functional diversity of species assemblages: the case of Angiosperms. Ecology Letters 23:254-264.
Pearse, W., Legendre, P., Peres-Neto, P.R. and Davies, D. (2019) The interaction of phylogeny and community structure: Linking the community composition and trait evolution of clades. Global Ecology and Biogeography 28:1499-1511.
Schiesari, L., Matias, M.G., Prado, P.I., Leibold, M.A., Albert, C.H., Howeth, J.G., Leroux, S.J., Pardini, R., Siqueira, T., Brancalion, P.H.S., Cabeza, M., Coutinho, R.M., Diniz-Filho, J.A.F., Fournier, B., Lahr, D.J.H., Lewinsohn, T.M., Martins, A., Morsello, C., Peres-Neto, P.R., Pillar, V.D. and Vázquez, D.P. 2019. Towards an applied metaecology. Perspectives in ecology and conservation 17, 172-181.
Gondeau, A. Aouabed, Z., Hijri, M., Peres-Neto, P.R. and Makarenkov, V. Object weighting: a new clustering approach to deal with outliers and cluster overlap in computational biology. IEEE/ACM transactions on computational biology and bioinformatics. DOI: 10.1109/TCBB.2019.2921577
Poisot, T., Bruneau, A., Gonzalez, A., Gravel, D. and Peres-Neto, P.R. Ecological Data Should Not Be So Hard to Find and Reuse. Trends in Ecology and Evolution 34:494-496.
Henriques‐Silva, R., Kubisch, A. and Peres-Neto, P.R. 2019. Latitudinal‐diversity gradients can be shaped by biotic processes: new insights from an eco‐evolutionary model. Ecography 42:259-271.
ter Braak, C.J.F., Peres-Neto, P.R. and Dray, S. 2018. Simple parametric tests for trait–environment association. Journal of Vegetation Science 29:801-811.
Renaut, S., Budden, A.E., Gravel, D., Poisot, T. and Peres-Neto, P.R. 2018. Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age. BioScience 68:400-411.
Clappe, S., Dray, S. and Peres-Neto, P.R. 2018. Beyond neutrality: disentangling the effects of species sorting and spurious correlations in community analysis. Ecology 99:1737-1747.
Gaggiotti, O.E., Chao, A., Peres‐Neto, P.R., Chiu, C.-H., Edwards, C., Fortin, M.-J., Jost, L., Richards, C.M. and Selkoe, K.A. 2018. Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales. Evolutionary Applications 11:1176-1193.
Molina‐Venegas, R., Moreno‐Saiz, J.C., Davies, T.J., Peres-Neto, P.R. and Rodriguez, M.A. 2018. Assessing among‐lineage variability in phylogenetic imputation of functional trait datasets. Ecography 41:1740-1749.
Bonte, D., Marshall, D., De Deyn, G.B. and Peres-Neto, P.R. 2018. 20 years after View from the Park: advance ecology and avoid editorial rejection in Oikos. Oikos 127:1-4.
Cadotte, M.W., Davies, T.J. and Peres-Neto, P.R. 2017. Why phylogenies do not always predict ecological differences. Ecological Monographs 87:535-551.
Jacobson, B., Dubois, D. and Peres-Neto, P.R. 2017. Phenotype-dependent selection underlies patterns of sorting across habitats: the case of stream-fishes. Oikos 126:1660-1671.
Nenzén, H., Filotas, E., Peres-Neto, P.R. and Gravel, D. 2017. Epidemiological landscape models reproduce cyclic insect outrbreaks. Ecological Complexity 31:78-87.
Nenzén, H., Peres-Neto, P.R. and Gravel, D. 2017. More than Moran: Coupling statistical and simulation models to understand how defoliation spread and weather variation drive insect outbreak dynamics. Canadian Journal of Forest Research 48:255-264.
ter Braak, C., Peres-Neto, P.R. and Dray, S. 2017. A critical issue in model-based inference for studying trait-based community assembly and a solution. PeerJ 5, e2885.
Morales-Castilla, I., Pearse, W., Davies, T.J. and Peres-Neto, P.R. 2017. Combining phylogeny and co-occurrence to improve single species distribution models. Global Ecology and Biogeography 26: 740–752.
Smith, A., Houde, A., Neff, B. and Peres-Neto, P.R. 2017. Effects of competition on fitness-related traits. Oecologia 183: 701-713.
Monteiro, V., Paiva, P. and Peres-Neto, P.R. 2017. A quantitative framework to estimate the relative importance of environment, spatial variation and patch connectivity in driving community composition. Journal of Animal Ecology 86:316-326.
Henriques-Silva, R., Pinel-Alloul, B. and Peres-Neto, P.R. 2016. Climate, history and life-history strategies interact in explaining differential macroecological patterns in freshwater zooplankton. Global Ecology and Biogeography 25:1454-1465.
Peres-Neto, P.R., Dray, S. and ter Braak, C. 2016. Linking trait variation to the environment: critical issues with community-weighted mean correlation resolved by the fourth-corner approach. Ecography 40: 806–816.
Davies, T.J., Urban, M.C., Rayfield, B., Cadotte, M.W. and Peres-Neto, P.R. 2016. Deconstructing the relationships between phylogenetic diversity and ecology: a case study on ecosystem functioning. Ecology 97:2212-2222.
Mazel, F., Davies, T.J., Georges, D., Lavergne, S., Thuiller, W. and Peres-Neto, P.R. 2016. Improving phylogenetic regression under complex evolutionary models. Ecology 97:286-293.
Lee, W.-S., Mangel, M. and Peres-Neto, P.R. 2016. Environmental integration: Patterns of correlation between environmental factors, early life decisions, and their long-term consequences. Evolutionary Ecology Research 17: 1-19.
Peres-Neto, P.R. 2016. Will technology trample peer review in ecology? Ongoing issues and potential solutions. Oikos 125: 3-9.
Samways, K., Leavitt, P., Magnan, P., Rodriguez, M.A. and Peres-Neto, P.R. 2015. Convergent polymorphism between stream and lake habitats: the case of brook charr. Canadian Journal of Fisheries and Aquatics Sciences 72: 1406-1414.
Maisonhaute, J.-E., Peres-Neto, P.R. and Lucas, E. 2015. Seasonal modulation of landscape effects on predatory beetle assemblage. Bulletin of Insectology 62: 181-191.
Gonzalez, A and Peres-Neto, P.R. 2015. Act to staunch loss of research data. Nature (Correspondence) 520: 436.
Fontaine, A., Devillers, R., Peres-Neto, P.R. and Johnson, L. 2015. Delineating marine ecological units: a novel approach for deciding which taxonomic group to use and which taxonomic resolution to choose. Diversity and Distributions 21: 1167-1180.
Jacobson, B., Grant, J.W.A. and Peres-Neto, P.R. 2015. The interaction between the spatial distribution of resource patches and population density: consequences for intra-specific growth and morphology. Journal of Animal Ecology 84:934-942.
Layeghifard, M., Makarenkov, V. and Peres-Neto, P.R. 2015. Spatial networks for inferring dispersal patterns in ecological communities. Global Ecology and Biogeography 24: 718-727.
Houde, A.L.S., Smith, A.D., Wilson, C.C., Peres-Neto, P.R. and Neff, B.D. 2015. Competitive effects between non-native salmonids and two populations of Atlantic salmon in natural and artificial streams. Ecology of Freshwater Fishes 25:248-260.
Yeh, Y.-C., Peres-Neto, P.R., Huang, S.‐W., Lai, Y.-C., Tu, C.-Y., Shiah, F.K., Gong, G.C. and Hsieh, C.-h. 2015. Determinism of bacterial metacommunity dynamics in the southern East China Sea varies depending on hydrography. Ecography 38: 198-212.
Peres-Neto, P.R. and Kembel, S.W. 2015. Phylogenetic gradient analysis: environmental drivers of phylogenetic variation across ecological communities (invited contribution). Plant Ecology 216: 709-724.
Henriques-Silva, R., Boivin, F., Calcagno, V., Urban, M. and Peres-Neto, P.R. 2015. On the evolution of dispersal via heterogeneity in spatial connectivity. Proceedings of the Royal Society 282: 20142879.
Galpern, P., Peres-Neto, P.R., Polfus, J., and Manseau, M. 2015. MEMGENE: Spatial pattern detection in genetic distance data. Methods in Ecology and Evolution 5: 1116–1120.
Senay, C., Boisclair, D., and Peres-Neto. 2015. Habitat-based polymorphism is common in stream fishes. Journal of Animal Ecology 84:219-227.
Boivin, F., Simard, A. and Peres-Neto, P.R. 2014. Setting Priorities for a Large-Scale Biodiversity Monitoring Programs through Public Consultation. PLOSOne 9:e113905
Lisboa, F.J.G., Peres-Neto, P.R., Chaer, G.M., Jesus, E.C., Mitchell R.J., Chapman, S.J., and Berbara, R.L. 2014. Much beyond Mantel: bringing Procrustes analyses to the plant and soil ecologist's toolbox. PLoS ONE 9: e101238.
Lee, W.S., Metcalfe, N.B., Réale, D., and Peres-Neto, P.R. 2014. Early growth trajectories affect sexual responsiveness. Proceedings of the Royal Society of London (B) 281:1777.
Dray, S., Choler, P., Dolédec, S., Peres-Neto, P.R., Thuiller, W., Pavoine, S., and ter Braak, C.J.F. 2014. Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation. Ecology 95:14–21.
Fernandes, I.M., Henriques-Silva, R., Penha, J., Zuanon, J., and Peres-Neto, P.R. 2014. Spatiotemporal dynamics in metacommunity structure is predictable: the case of floodplain-fish communities. Ecography 37: 464-475.
Joly, S., Davies, T.J., Archambault, A., Bruneau, A., Derry, A., Kembel, S., Peres-Neto, P.R., Vamosi, J., and Wheeler, T.A. 2014. Ecology in the age of DNA barcoding: the resource, the promise, and the challenges ahead. Molecular Ecology Resources 14: 221-232.
Guénard, G., Legendre, P., Peres-Neto, P.R. 2013. Phylogenetic eigenvector maps (PEM): a framework to model and predict species traits. Methods in Ecology and Evolution 4:1120-1131.
Layeghifard, M., Peres-Neto, P.R., and Makarenkov, V. 2013. Inferring explicit weighted consensus networks to represent alternative evolutionary histories. BMC Evolutionary Biology 13: 274.
Martínez-Cabrera, H.I., and Peres-Neto, P.R. 2013. Shifts in climate foster opportunities for species radiation: the case of South African geraniums. PLoS ONE 8: e83087.
Colborme, S.F., Peres-Neto, P.R., Longstaffe, F.J., and Neff, B.D. 2013. Effects of foraging and sexual selection on ecomorphology of a fish with alternative reproductive tactics. Behavioral Ecology 24:1339-1347.
Vogt, R., Peres-Neto, P.R. and Beisner, B.E. 2013. Using functional traits to investigate the determinants of crustacean zooplankton community structure. Oikos 122: 1700–1709.
Henriques-Silva, R. Lindo, Z. and Peres-Neto, P.R. 2013. A community of metacommunities: exploring patterns in species distributions across large geographic areas. Ecology 94:627–639.
Cyr F., P. Peres-Neto and B. Angers. 2012. Allopatric distribution of generalist parasites: interplay between postglacial dispersal and host species. Canadian Journal of Fisheries and Aquatic Sciences, 69: 1491-1498.
Dray, S., R. Pélissier, P. Couteron, M.-J. Fortin, P. Legendre, P. R. Peres-Neto, E. Bellier, R. Bivand, F.G. Blanchet, M. De Cáceres, A.-B. Dufour, E. Heegaard, T. Jombart, F. Munoz, J. Oksanen, J. Thioulouse, H.H. Wagner. 2012. Community ecology in the age of multivariate multiscale spatial analysis. Ecological Monographs (Review) 82:257-275. (6 first authors contributed equally)
Layeghifard, M., Peres-Neto, P.R., Makarenkov, V. 2012. Using directed phylogenetic networks to retrace species dispersal history. Molecular Phylogenetics and Evolution 64: 190-197.
Peres-Neto, P.R., M.A. Leibold, S. Dray. 2012. Assessing the effects of spatial contingency and environmental filtering on metacommunity phylogenetics. Ecology 93: S14–S30 (invited contribution in special issue on “Integrating ecology and phylogenetics”).
Revell, L. J., D. L. Mahler, P. R. Peres-Neto, and B. D. Redelings. 2012. A new method for identifying exceptional phenotypic diversification. Evolution 66: 135-146.
Seiferling, I.S., Proulx, R., Peres-Neto, P.R., Fahrig, L. and Messier, C. 2012. Measuring protected-area isolation and correlations of isolation with land-use intensity and protection status. Conservation Biology 26: 610-618.
Colborne, S.F., Bellemare, M.C., Peres-Neto, P.R., and Neff, B.D. 2011. The influence of reproductive tactic on morphological variation and swimming performance in bluegill sunfish (Lepomis macrochirus). Canadian Journal of Fisheries and Aquatic Sciences 68: 1802-1810.
Peres-Neto, P.R. and Legendre, P. 2010. Estimating and controlling for spatial autocorrelation in the study of ecological communities. Global Ecology and Biogeography 19: 174-184.
Makarenkov, V., Xie, J., Boc, A., Peres-Neto, P., Lapointe, F.-J., and Legendre, P. 2010. Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees. BMC Evolutionary Biology 10: 250.
Lévesque, S., Beisner, B.E., Peres-Neto, P.R. 2010. Meso-scale distributions of lake zooplankton reveal spatially and temporally varying trophic cascades. Journal of Plankton research 10: 1369-1384.
Maisonhaute, J.-E., Peres-Neto, P.R. and Lucas, E. 2010. Influence of agronomic practices, local environment and landscape structure on predatory beetle. Agriculture, Ecosystems and Environment 139: 500 - 507.
Leibold, M.A., Economo, E.P. and Peres-Neto, P.R. 2010. Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography. Ecology Letters 13: 1290-1299.
Jacobson, B. and Peres-Neto, P.R. 2010. Quantifying and disentangling dispersal in metacommunities: How close have we come? How far is there to go? Landscape Ecology 25:495–507.
Azeria, T., Fortin, D., Hébert, C., Peres-Neto, P.R., Pothier, D., and Ruel, J.-C. 2009. Using null model analysis of species co-occurrences to classify assemblages: an aid in explaining biodiversity patterns and selection of indicator species. Diversity and Distributions 15: 958-971.
Beisner, B.E. and Peres-Neto, P.R. 2009. Seasonal trophic dynamics affect zooplankton community variability. Freshwater Biology 54: 2351-2363.
Legendre, P., Borcard, P., and Peres-Neto, P.R. 2008. Analyzing or explaining beta diversity. Ecology 89: 3238–3244.
Pham, S.V., Leavitt, P.R. McGowan, S., and Peres-Neto, P.R. 2008. Spatial variability of climate and land-use effects on lakes of the northern Great Plains. Limnology and Oceanography, 53: 728–742.
Dormann, C.F., McPherson, J.M., Araújo, M.B., Bivand, R., Bolliger, J., Carl, G., Davies, R., Hirzel, A., Jetz, W., Kissling, W.D., Kühn, I., Ohlemüller, R., Peres-Neto, P.R., Reineking, B., Schröder, B. Schurr, F.M. & Wilson, R. 2007. Incorporating spatial autocorrelation in the analysis of ecological species distribution data: a user’s guide. Ecography 30: 609-628.
Beisner, B.E., Peres-Neto, P.R., Lindstrom, E., Barnett, A., and Longhi, M.L. 2006. The role of dispersal in structuring lake communities from bacteria to fish. Ecology 87:2895-2991.
Peres-Neto, P.R., P. Legendre, S. Dray, and D. Borcard. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87:2614-2625.
Griffith, D.A., and P.R. Peres-Neto. 2006. Spatial modeling in ecology: the flexibility of eigenfunction spatial analyses. Ecology 87 :2063-2613. (the two authors contributed equally)
Peres-Neto, P.R. 2006. A unified strategy for estimating and controlling spatial, temporal and phylogenetic autocorrelation in ecological models. Oecologia Brasiliensis 10: 105-119.
Dray, S., P. Legendre, and P.R. Peres-Neto. 2006. Spatial modeling: a comprehensive framework for principal coordinate analysis of neighbor matrices (PCNM). Ecological Modelling 196: 483-493.
Legendre, P., D. Borcard, and P.R. Peres-Neto. 2005. Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecological Monographs 75:435-450.
Peres-Neto, P.R., D.A. Jackson, and K.M. Somers. 2005. How many principal components? Stopping rules for determining the number of non-trivial axes revisited. Computational Statistics and Data Analysis 49:974-997.
Peres-Neto, P.R. 2004. Patterns in the co-occurrence of stream fish metacommunties: the role of site suitability, morphology and phylogeny versus species interactions. Oecologia 140:352-360.
Peres-Neto, P.R., and P. Magnan. 2004. The influence of swimming demand on phenotypic plasticity and morphological integration: a comparison of two polymorphic charr species. Oecologia 140:36-45.
Peres-Neto, P.R., D.A. Jackson, and K.M. Somers. 2003. Giving meaningful interpretation to ordination axes: assessing loading significance in principal component analysis. Ecology 84: 2347-2363.
Olden, J.D., D.A. Jackson, and P.R. Peres-Neto. 2002. Predictive models for fish species distributions: A note on proper validation and chance predictions. Transactions of the North American Fisheries Society 131:329-336.
Wilkinson, M., P.R. Peres-Neto, P. Foster, and C. Mocriff. 2002. Type I error rates of the parsimony PTP test. Systematic Biology 51:524-527.
Maggiore, V., W. Chao, P.R. Peres-Neto, and A.R. McIntosh. 2002. An empirical comparison of SPM preprocessing parameters in the analysis of fMRI data. Neuroimage 17:19-28.
Peres-Neto, P.R., J.D. Olden, and D.A. Jackson. 2001. Environmentally constrained null models: site suitability as occupancy criterion. Oikos 93:110-120.
Peres-Neto, P.R., and Jackson, D.A. 2001. How are communities build from pools? A review of the edited volume by Weiher, E. and P. Keddy. 1999. Ecological Assembly Rules. Global Ecology & Biogeography 11:438–439.
Peres-Neto, P.R., and J.D. Olden. 2001. Assessing the robustness of randomization tests: examples from behavioural studies. Animal Behaviour 61:79-86.
Peres-Neto, P.R., and D.A. Jackson. 2001. How well do multivariate data sets match? The robustness and flexibility of a Procrustean superimposition approach over the Mantel test. Oecologia 129:169-178.
Jackson, D.A., P.R. Peres-Neto, and J.D. Olden. 2001. What controls who is where in freshwater fish communities – the roles of biotic, abiotic and spatial factors? Canadian Journal of Fisheries and Aquatic Sciences 58:157-170.
Olden, J.D., D.A. Jackson, and P.R. Peres-Neto. 2001. Spatial isolation and fish communities in drainage lakes. Oecologia 127:572-585.
Peres-Neto, P.R., and D.A. Jackson. 2001. The importance of scaling of multivariate analysis in ecological studies. Écoscience 8:522-526.
Peres-Neto, P.R., and F. Marques. 2000. When are random data not random, or is the PTP test useful? Cladistics 16:420-424.
Peres-Neto, P.R. 1999. How many statistical tests are too many? The problem of conducting multiple inferences revisited. Marine Ecology Progress Series 176:303-306.
Peres, P.R., C.R.S.F. Bizerril, and R. Iglesias. 1995. An overview of some aspects of river ecology: a case study on fish assemblages distribution in an eastern Brazilian coastal river. Oecologia Brasiliensis 1:317-334.
Bizerril, C.R.S.F., and P.R. Peres. 1995. Redescription of Bryconamericus microcephalus and description of a new species of Bryconamericus from eastern Brazil. Comunicações do Museu de Ciências - PUCRS, série Zoologia, 8:13-26.
Esteves, F.A., M.S Suzuki, M.F.P. Callisto, and P.R. Peres. 1995. Organic matter content, organic carbon, nitrogen, phosphorous and pheopigments in the sediment of some freshwater lake ecosystems on the coast of the State of Espírito Santo. Oecologia Brasiliensis 1:407-417.
Rosa, C.A., P.B. Morais, S.R. Santos, P.R. Peres, L.C. Mendonça-Hagler, and A.N. Hagler. 1995. Yeast associated with different plant resources in Sandy Coastal Plains of Southeastern Brazil. Mycological Research 99:1047-1054.
Mazzoni, R., and P.R. Peres. 1994. Multivariate morphometrical discrimination and pygmentary study of two species of Hypostomus Lacépède, 1803 (Osteichthyes, Loricariidae) from rio Paraíba do Sul, Brazil. Arquives of Biology and Technology 37:561-567.
Peres, P.R., and C.R.S.F. Bizerril. 1994. The Jackknifing of the multivariate allometric coefficient (Jolicouer 1963): a case study on allometry and morphometric variation in Corydoras barbatus (Quoy & Gaimard, 1824) (Siluriformes, Callichthydae). Arquives of Biology and Technology 37:449-454.
Bizerril, C.R.S.F., and P.R. Peres. 1992. Description of a new species of Microglanis (Siluroidei, Pimelodidae) from eastern Brazil. Revue Française d'Aquariologie 18:97-100.
Mandarim-de-Lacerda, A.F., R.H.P. Andreata, and P.R. Peres. 1992. Ensaio metodológico de avaliação biométrica em folhas adultas de Smilax rufescens Griseb. (Smilacaceae). Pesquisas (série Botânica) 43:199-221.
Caramaschi, E.P., R. Mazzoni, and P.R. Peres-Neto (eds.). 1999. Ecology of Stream Fishes. Federal University of Rio de Janeiro, Rio de Janeiro.
Caramaschi, E.P., R. Mazzoni, and P.R. Peres-Neto (eds.). 1999. Ecology of Stream Fishes. Federal University of Rio de Janeiro, Rio de Janeiro.
Peres, P.R., J.L. Valentin and F. Fernandez (eds.). 1995. Topics on the Treatment of Biological Data. Federal University of Rio de Janeiro, Rio de Janeiro.
Founier, B., Vázquez-Rivera, H., Clappe, S., Donelle, L., Braga, P.H.P. and Peres-Neto, P.R. 2020. The spatial frequency of climatic conditions affects niche composition and functional diversity of species assemblages: the case of Angiosperms. Ecology Letters 23:254-264.
Pearse, W., Legendre, P., Peres-Neto, P.R. and Davies, D. (2019) The interaction of phylogeny and community structure: Linking the community composition and trait evolution of clades. Global Ecology and Biogeography 28:1499-1511.
Schiesari, L., Matias, M.G., Prado, P.I., Leibold, M.A., Albert, C.H., Howeth, J.G., Leroux, S.J., Pardini, R., Siqueira, T., Brancalion, P.H.S., Cabeza, M., Coutinho, R.M., Diniz-Filho, J.A.F., Fournier, B., Lahr, D.J.H., Lewinsohn, T.M., Martins, A., Morsello, C., Peres-Neto, P.R., Pillar, V.D. and Vázquez, D.P. 2019. Towards an applied metaecology. Perspectives in ecology and conservation 17, 172-181.
Gondeau, A. Aouabed, Z., Hijri, M., Peres-Neto, P.R. and Makarenkov, V. Object weighting: a new clustering approach to deal with outliers and cluster overlap in computational biology. IEEE/ACM transactions on computational biology and bioinformatics. DOI: 10.1109/TCBB.2019.2921577
Poisot, T., Bruneau, A., Gonzalez, A., Gravel, D. and Peres-Neto, P.R. Ecological Data Should Not Be So Hard to Find and Reuse. Trends in Ecology and Evolution 34:494-496.
Henriques‐Silva, R., Kubisch, A. and Peres-Neto, P.R. 2019. Latitudinal‐diversity gradients can be shaped by biotic processes: new insights from an eco‐evolutionary model. Ecography 42:259-271.
ter Braak, C.J.F., Peres-Neto, P.R. and Dray, S. 2018. Simple parametric tests for trait–environment association. Journal of Vegetation Science 29:801-811.
Renaut, S., Budden, A.E., Gravel, D., Poisot, T. and Peres-Neto, P.R. 2018. Management, Archiving, and Sharing for Biologists and the Role of Research Institutions in the Technology-Oriented Age. BioScience 68:400-411.
Clappe, S., Dray, S. and Peres-Neto, P.R. 2018. Beyond neutrality: disentangling the effects of species sorting and spurious correlations in community analysis. Ecology 99:1737-1747.
Gaggiotti, O.E., Chao, A., Peres‐Neto, P.R., Chiu, C.-H., Edwards, C., Fortin, M.-J., Jost, L., Richards, C.M. and Selkoe, K.A. 2018. Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales. Evolutionary Applications 11:1176-1193.
Molina‐Venegas, R., Moreno‐Saiz, J.C., Davies, T.J., Peres-Neto, P.R. and Rodriguez, M.A. 2018. Assessing among‐lineage variability in phylogenetic imputation of functional trait datasets. Ecography 41:1740-1749.
Bonte, D., Marshall, D., De Deyn, G.B. and Peres-Neto, P.R. 2018. 20 years after View from the Park: advance ecology and avoid editorial rejection in Oikos. Oikos 127:1-4.
Cadotte, M.W., Davies, T.J. and Peres-Neto, P.R. 2017. Why phylogenies do not always predict ecological differences. Ecological Monographs 87:535-551.
Jacobson, B., Dubois, D. and Peres-Neto, P.R. 2017. Phenotype-dependent selection underlies patterns of sorting across habitats: the case of stream-fishes. Oikos 126:1660-1671.
Nenzén, H., Filotas, E., Peres-Neto, P.R. and Gravel, D. 2017. Epidemiological landscape models reproduce cyclic insect outrbreaks. Ecological Complexity 31:78-87.
Nenzén, H., Peres-Neto, P.R. and Gravel, D. 2017. More than Moran: Coupling statistical and simulation models to understand how defoliation spread and weather variation drive insect outbreak dynamics. Canadian Journal of Forest Research 48:255-264.
ter Braak, C., Peres-Neto, P.R. and Dray, S. 2017. A critical issue in model-based inference for studying trait-based community assembly and a solution. PeerJ 5, e2885.
Morales-Castilla, I., Pearse, W., Davies, T.J. and Peres-Neto, P.R. 2017. Combining phylogeny and co-occurrence to improve single species distribution models. Global Ecology and Biogeography 26: 740–752.
Smith, A., Houde, A., Neff, B. and Peres-Neto, P.R. 2017. Effects of competition on fitness-related traits. Oecologia 183: 701-713.
Monteiro, V., Paiva, P. and Peres-Neto, P.R. 2017. A quantitative framework to estimate the relative importance of environment, spatial variation and patch connectivity in driving community composition. Journal of Animal Ecology 86:316-326.
Henriques-Silva, R., Pinel-Alloul, B. and Peres-Neto, P.R. 2016. Climate, history and life-history strategies interact in explaining differential macroecological patterns in freshwater zooplankton. Global Ecology and Biogeography 25:1454-1465.
Peres-Neto, P.R., Dray, S. and ter Braak, C. 2016. Linking trait variation to the environment: critical issues with community-weighted mean correlation resolved by the fourth-corner approach. Ecography 40: 806–816.
Davies, T.J., Urban, M.C., Rayfield, B., Cadotte, M.W. and Peres-Neto, P.R. 2016. Deconstructing the relationships between phylogenetic diversity and ecology: a case study on ecosystem functioning. Ecology 97:2212-2222.
Mazel, F., Davies, T.J., Georges, D., Lavergne, S., Thuiller, W. and Peres-Neto, P.R. 2016. Improving phylogenetic regression under complex evolutionary models. Ecology 97:286-293.
Lee, W.-S., Mangel, M. and Peres-Neto, P.R. 2016. Environmental integration: Patterns of correlation between environmental factors, early life decisions, and their long-term consequences. Evolutionary Ecology Research 17: 1-19.
Peres-Neto, P.R. 2016. Will technology trample peer review in ecology? Ongoing issues and potential solutions. Oikos 125: 3-9.
Samways, K., Leavitt, P., Magnan, P., Rodriguez, M.A. and Peres-Neto, P.R. 2015. Convergent polymorphism between stream and lake habitats: the case of brook charr. Canadian Journal of Fisheries and Aquatics Sciences 72: 1406-1414.
Maisonhaute, J.-E., Peres-Neto, P.R. and Lucas, E. 2015. Seasonal modulation of landscape effects on predatory beetle assemblage. Bulletin of Insectology 62: 181-191.
Gonzalez, A and Peres-Neto, P.R. 2015. Act to staunch loss of research data. Nature (Correspondence) 520: 436.
Fontaine, A., Devillers, R., Peres-Neto, P.R. and Johnson, L. 2015. Delineating marine ecological units: a novel approach for deciding which taxonomic group to use and which taxonomic resolution to choose. Diversity and Distributions 21: 1167-1180.
Jacobson, B., Grant, J.W.A. and Peres-Neto, P.R. 2015. The interaction between the spatial distribution of resource patches and population density: consequences for intra-specific growth and morphology. Journal of Animal Ecology 84:934-942.
Layeghifard, M., Makarenkov, V. and Peres-Neto, P.R. 2015. Spatial networks for inferring dispersal patterns in ecological communities. Global Ecology and Biogeography 24: 718-727.
Houde, A.L.S., Smith, A.D., Wilson, C.C., Peres-Neto, P.R. and Neff, B.D. 2015. Competitive effects between non-native salmonids and two populations of Atlantic salmon in natural and artificial streams. Ecology of Freshwater Fishes 25:248-260.
Yeh, Y.-C., Peres-Neto, P.R., Huang, S.‐W., Lai, Y.-C., Tu, C.-Y., Shiah, F.K., Gong, G.C. and Hsieh, C.-h. 2015. Determinism of bacterial metacommunity dynamics in the southern East China Sea varies depending on hydrography. Ecography 38: 198-212.
Peres-Neto, P.R. and Kembel, S.W. 2015. Phylogenetic gradient analysis: environmental drivers of phylogenetic variation across ecological communities (invited contribution). Plant Ecology 216: 709-724.
Henriques-Silva, R., Boivin, F., Calcagno, V., Urban, M. and Peres-Neto, P.R. 2015. On the evolution of dispersal via heterogeneity in spatial connectivity. Proceedings of the Royal Society 282: 20142879.
Galpern, P., Peres-Neto, P.R., Polfus, J., and Manseau, M. 2015. MEMGENE: Spatial pattern detection in genetic distance data. Methods in Ecology and Evolution 5: 1116–1120.
Senay, C., Boisclair, D., and Peres-Neto. 2015. Habitat-based polymorphism is common in stream fishes. Journal of Animal Ecology 84:219-227.
Boivin, F., Simard, A. and Peres-Neto, P.R. 2014. Setting Priorities for a Large-Scale Biodiversity Monitoring Programs through Public Consultation. PLOSOne 9:e113905
Lisboa, F.J.G., Peres-Neto, P.R., Chaer, G.M., Jesus, E.C., Mitchell R.J., Chapman, S.J., and Berbara, R.L. 2014. Much beyond Mantel: bringing Procrustes analyses to the plant and soil ecologist's toolbox. PLoS ONE 9: e101238.
Lee, W.S., Metcalfe, N.B., Réale, D., and Peres-Neto, P.R. 2014. Early growth trajectories affect sexual responsiveness. Proceedings of the Royal Society of London (B) 281:1777.
Dray, S., Choler, P., Dolédec, S., Peres-Neto, P.R., Thuiller, W., Pavoine, S., and ter Braak, C.J.F. 2014. Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation. Ecology 95:14–21.
Fernandes, I.M., Henriques-Silva, R., Penha, J., Zuanon, J., and Peres-Neto, P.R. 2014. Spatiotemporal dynamics in metacommunity structure is predictable: the case of floodplain-fish communities. Ecography 37: 464-475.
Joly, S., Davies, T.J., Archambault, A., Bruneau, A., Derry, A., Kembel, S., Peres-Neto, P.R., Vamosi, J., and Wheeler, T.A. 2014. Ecology in the age of DNA barcoding: the resource, the promise, and the challenges ahead. Molecular Ecology Resources 14: 221-232.
Guénard, G., Legendre, P., Peres-Neto, P.R. 2013. Phylogenetic eigenvector maps (PEM): a framework to model and predict species traits. Methods in Ecology and Evolution 4:1120-1131.
Layeghifard, M., Peres-Neto, P.R., and Makarenkov, V. 2013. Inferring explicit weighted consensus networks to represent alternative evolutionary histories. BMC Evolutionary Biology 13: 274.
Martínez-Cabrera, H.I., and Peres-Neto, P.R. 2013. Shifts in climate foster opportunities for species radiation: the case of South African geraniums. PLoS ONE 8: e83087.
Colborme, S.F., Peres-Neto, P.R., Longstaffe, F.J., and Neff, B.D. 2013. Effects of foraging and sexual selection on ecomorphology of a fish with alternative reproductive tactics. Behavioral Ecology 24:1339-1347.
Vogt, R., Peres-Neto, P.R. and Beisner, B.E. 2013. Using functional traits to investigate the determinants of crustacean zooplankton community structure. Oikos 122: 1700–1709.
Henriques-Silva, R. Lindo, Z. and Peres-Neto, P.R. 2013. A community of metacommunities: exploring patterns in species distributions across large geographic areas. Ecology 94:627–639.
Cyr F., P. Peres-Neto and B. Angers. 2012. Allopatric distribution of generalist parasites: interplay between postglacial dispersal and host species. Canadian Journal of Fisheries and Aquatic Sciences, 69: 1491-1498.
Dray, S., R. Pélissier, P. Couteron, M.-J. Fortin, P. Legendre, P. R. Peres-Neto, E. Bellier, R. Bivand, F.G. Blanchet, M. De Cáceres, A.-B. Dufour, E. Heegaard, T. Jombart, F. Munoz, J. Oksanen, J. Thioulouse, H.H. Wagner. 2012. Community ecology in the age of multivariate multiscale spatial analysis. Ecological Monographs (Review) 82:257-275. (6 first authors contributed equally)
Layeghifard, M., Peres-Neto, P.R., Makarenkov, V. 2012. Using directed phylogenetic networks to retrace species dispersal history. Molecular Phylogenetics and Evolution 64: 190-197.
Peres-Neto, P.R., M.A. Leibold, S. Dray. 2012. Assessing the effects of spatial contingency and environmental filtering on metacommunity phylogenetics. Ecology 93: S14–S30 (invited contribution in special issue on “Integrating ecology and phylogenetics”).
Revell, L. J., D. L. Mahler, P. R. Peres-Neto, and B. D. Redelings. 2012. A new method for identifying exceptional phenotypic diversification. Evolution 66: 135-146.
Seiferling, I.S., Proulx, R., Peres-Neto, P.R., Fahrig, L. and Messier, C. 2012. Measuring protected-area isolation and correlations of isolation with land-use intensity and protection status. Conservation Biology 26: 610-618.
Colborne, S.F., Bellemare, M.C., Peres-Neto, P.R., and Neff, B.D. 2011. The influence of reproductive tactic on morphological variation and swimming performance in bluegill sunfish (Lepomis macrochirus). Canadian Journal of Fisheries and Aquatic Sciences 68: 1802-1810.
Peres-Neto, P.R. and Legendre, P. 2010. Estimating and controlling for spatial autocorrelation in the study of ecological communities. Global Ecology and Biogeography 19: 174-184.
Makarenkov, V., Xie, J., Boc, A., Peres-Neto, P., Lapointe, F.-J., and Legendre, P. 2010. Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees. BMC Evolutionary Biology 10: 250.
Lévesque, S., Beisner, B.E., Peres-Neto, P.R. 2010. Meso-scale distributions of lake zooplankton reveal spatially and temporally varying trophic cascades. Journal of Plankton research 10: 1369-1384.
Maisonhaute, J.-E., Peres-Neto, P.R. and Lucas, E. 2010. Influence of agronomic practices, local environment and landscape structure on predatory beetle. Agriculture, Ecosystems and Environment 139: 500 - 507.
Leibold, M.A., Economo, E.P. and Peres-Neto, P.R. 2010. Metacommunity phylogenetics: separating the roles of environmental filters and historical biogeography. Ecology Letters 13: 1290-1299.
Jacobson, B. and Peres-Neto, P.R. 2010. Quantifying and disentangling dispersal in metacommunities: How close have we come? How far is there to go? Landscape Ecology 25:495–507.
Azeria, T., Fortin, D., Hébert, C., Peres-Neto, P.R., Pothier, D., and Ruel, J.-C. 2009. Using null model analysis of species co-occurrences to classify assemblages: an aid in explaining biodiversity patterns and selection of indicator species. Diversity and Distributions 15: 958-971.
Beisner, B.E. and Peres-Neto, P.R. 2009. Seasonal trophic dynamics affect zooplankton community variability. Freshwater Biology 54: 2351-2363.
Legendre, P., Borcard, P., and Peres-Neto, P.R. 2008. Analyzing or explaining beta diversity. Ecology 89: 3238–3244.
Pham, S.V., Leavitt, P.R. McGowan, S., and Peres-Neto, P.R. 2008. Spatial variability of climate and land-use effects on lakes of the northern Great Plains. Limnology and Oceanography, 53: 728–742.
Dormann, C.F., McPherson, J.M., Araújo, M.B., Bivand, R., Bolliger, J., Carl, G., Davies, R., Hirzel, A., Jetz, W., Kissling, W.D., Kühn, I., Ohlemüller, R., Peres-Neto, P.R., Reineking, B., Schröder, B. Schurr, F.M. & Wilson, R. 2007. Incorporating spatial autocorrelation in the analysis of ecological species distribution data: a user’s guide. Ecography 30: 609-628.
Beisner, B.E., Peres-Neto, P.R., Lindstrom, E., Barnett, A., and Longhi, M.L. 2006. The role of dispersal in structuring lake communities from bacteria to fish. Ecology 87:2895-2991.
Peres-Neto, P.R., P. Legendre, S. Dray, and D. Borcard. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87:2614-2625.
Griffith, D.A., and P.R. Peres-Neto. 2006. Spatial modeling in ecology: the flexibility of eigenfunction spatial analyses. Ecology 87 :2063-2613. (the two authors contributed equally)
Peres-Neto, P.R. 2006. A unified strategy for estimating and controlling spatial, temporal and phylogenetic autocorrelation in ecological models. Oecologia Brasiliensis 10: 105-119.
Dray, S., P. Legendre, and P.R. Peres-Neto. 2006. Spatial modeling: a comprehensive framework for principal coordinate analysis of neighbor matrices (PCNM). Ecological Modelling 196: 483-493.
Legendre, P., D. Borcard, and P.R. Peres-Neto. 2005. Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecological Monographs 75:435-450.
Peres-Neto, P.R., D.A. Jackson, and K.M. Somers. 2005. How many principal components? Stopping rules for determining the number of non-trivial axes revisited. Computational Statistics and Data Analysis 49:974-997.
Peres-Neto, P.R. 2004. Patterns in the co-occurrence of stream fish metacommunties: the role of site suitability, morphology and phylogeny versus species interactions. Oecologia 140:352-360.
Peres-Neto, P.R., and P. Magnan. 2004. The influence of swimming demand on phenotypic plasticity and morphological integration: a comparison of two polymorphic charr species. Oecologia 140:36-45.
Peres-Neto, P.R., D.A. Jackson, and K.M. Somers. 2003. Giving meaningful interpretation to ordination axes: assessing loading significance in principal component analysis. Ecology 84: 2347-2363.
Olden, J.D., D.A. Jackson, and P.R. Peres-Neto. 2002. Predictive models for fish species distributions: A note on proper validation and chance predictions. Transactions of the North American Fisheries Society 131:329-336.
Wilkinson, M., P.R. Peres-Neto, P. Foster, and C. Mocriff. 2002. Type I error rates of the parsimony PTP test. Systematic Biology 51:524-527.
Maggiore, V., W. Chao, P.R. Peres-Neto, and A.R. McIntosh. 2002. An empirical comparison of SPM preprocessing parameters in the analysis of fMRI data. Neuroimage 17:19-28.
Peres-Neto, P.R., J.D. Olden, and D.A. Jackson. 2001. Environmentally constrained null models: site suitability as occupancy criterion. Oikos 93:110-120.
Peres-Neto, P.R., and Jackson, D.A. 2001. How are communities build from pools? A review of the edited volume by Weiher, E. and P. Keddy. 1999. Ecological Assembly Rules. Global Ecology & Biogeography 11:438–439.
Peres-Neto, P.R., and J.D. Olden. 2001. Assessing the robustness of randomization tests: examples from behavioural studies. Animal Behaviour 61:79-86.
Peres-Neto, P.R., and D.A. Jackson. 2001. How well do multivariate data sets match? The robustness and flexibility of a Procrustean superimposition approach over the Mantel test. Oecologia 129:169-178.
Jackson, D.A., P.R. Peres-Neto, and J.D. Olden. 2001. What controls who is where in freshwater fish communities – the roles of biotic, abiotic and spatial factors? Canadian Journal of Fisheries and Aquatic Sciences 58:157-170.
Olden, J.D., D.A. Jackson, and P.R. Peres-Neto. 2001. Spatial isolation and fish communities in drainage lakes. Oecologia 127:572-585.
Peres-Neto, P.R., and D.A. Jackson. 2001. The importance of scaling of multivariate analysis in ecological studies. Écoscience 8:522-526.
Peres-Neto, P.R., and F. Marques. 2000. When are random data not random, or is the PTP test useful? Cladistics 16:420-424.
Peres-Neto, P.R. 1999. How many statistical tests are too many? The problem of conducting multiple inferences revisited. Marine Ecology Progress Series 176:303-306.
Peres, P.R., C.R.S.F. Bizerril, and R. Iglesias. 1995. An overview of some aspects of river ecology: a case study on fish assemblages distribution in an eastern Brazilian coastal river. Oecologia Brasiliensis 1:317-334.
Bizerril, C.R.S.F., and P.R. Peres. 1995. Redescription of Bryconamericus microcephalus and description of a new species of Bryconamericus from eastern Brazil. Comunicações do Museu de Ciências - PUCRS, série Zoologia, 8:13-26.
Esteves, F.A., M.S Suzuki, M.F.P. Callisto, and P.R. Peres. 1995. Organic matter content, organic carbon, nitrogen, phosphorous and pheopigments in the sediment of some freshwater lake ecosystems on the coast of the State of Espírito Santo. Oecologia Brasiliensis 1:407-417.
Rosa, C.A., P.B. Morais, S.R. Santos, P.R. Peres, L.C. Mendonça-Hagler, and A.N. Hagler. 1995. Yeast associated with different plant resources in Sandy Coastal Plains of Southeastern Brazil. Mycological Research 99:1047-1054.
Mazzoni, R., and P.R. Peres. 1994. Multivariate morphometrical discrimination and pygmentary study of two species of Hypostomus Lacépède, 1803 (Osteichthyes, Loricariidae) from rio Paraíba do Sul, Brazil. Arquives of Biology and Technology 37:561-567.
Peres, P.R., and C.R.S.F. Bizerril. 1994. The Jackknifing of the multivariate allometric coefficient (Jolicouer 1963): a case study on allometry and morphometric variation in Corydoras barbatus (Quoy & Gaimard, 1824) (Siluriformes, Callichthydae). Arquives of Biology and Technology 37:449-454.
Bizerril, C.R.S.F., and P.R. Peres. 1992. Description of a new species of Microglanis (Siluroidei, Pimelodidae) from eastern Brazil. Revue Française d'Aquariologie 18:97-100.
Mandarim-de-Lacerda, A.F., R.H.P. Andreata, and P.R. Peres. 1992. Ensaio metodológico de avaliação biométrica em folhas adultas de Smilax rufescens Griseb. (Smilacaceae). Pesquisas (série Botânica) 43:199-221.
Caramaschi, E.P., R. Mazzoni, and P.R. Peres-Neto (eds.). 1999. Ecology of Stream Fishes. Federal University of Rio de Janeiro, Rio de Janeiro.
Caramaschi, E.P., R. Mazzoni, and P.R. Peres-Neto (eds.). 1999. Ecology of Stream Fishes. Federal University of Rio de Janeiro, Rio de Janeiro.
Peres, P.R., J.L. Valentin and F. Fernandez (eds.). 1995. Topics on the Treatment of Biological Data. Federal University of Rio de Janeiro, Rio de Janeiro.
